Example SummarizedExperiment containing gene-level RNA-seq data.

rse

Format

An object of class RangedSummarizedExperiment with 500 rows and 12 columns.

Details

Generated with DESeq2::makeExampleDESeqDataSet(). Contains actual gene identifiers and Ensembl annotations.

Examples

suppressPackageStartupMessages(library(SummarizedExperiment)) data(rse) class(rse)
#> [1] "RangedSummarizedExperiment" #> attr(,"package") #> [1] "SummarizedExperiment"
rse
#> class: RangedSummarizedExperiment #> dim: 500 12 #> metadata(3): version date interestingGroups #> assays(1): counts #> rownames(500): gene001 gene002 ... gene499 gene500 #> rowData names(5): geneID geneName geneBiotype broadClass entrezID #> colnames(12): sample01 sample02 ... sample11 sample12 #> colData names(1): condition